species:   Scscl
pid:       PID1705
parent:    Ssc-milR-181
paralog:   
locus:     NW_001820832.1:1559730-1559826
matures:   ['UUUAAGGACGACUUUUCUUGAA', 'AAGAAAAAAAGUUAUUGAACG']
srr:       SRR12527896
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527896.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527896.cram NW_001820832.1:1559730-1559826

7 out of bounds
22 alignments
0 proper strand
0 stranded perfect matches

          ************************                             *************************         
AGUGAAGGGACUCAAGAAAAAAAGUUAUUGAACGCCGUGGAUCGUGUUAUUGAGAAUUCACCUAUUUUAAGGACGACUUUUCUUGAAGUUCAAGACC
.((....(((((((((((((...(((.(((((....((((((..(.......)..))))))....))))).)))...)))))))).)))))...)).
-----------------------------------------------------------------UUUAAGGACGACUUUUCUUGAA---------- l=22 a=0 c
-------------AAGAAAAAAAGUUAUUGAACG--------------------------------------------------------------- l=21 a=0 c*
-----------------------------------------------------------------UUUAAGGACGACUUUUCUUGAA---------- l=22 a=0 ma
-------------AAGAAAAAAAGUUAUUGAACG--------------------------------------------------------------- l=21 a=0 ma*


No alignments to locus

mb-01011
ax-1001011
ku-01
ss-110111001100
fn-001
